AgBioDatabase Finder: an online tool to help researchers find and submit agricultural genomic, genetic, and breeding data

Cabugos, Leyla; Buble, Katheryn; Daenzer, Jenna; Jung, Sook; Main, Dorrie; Marrano, Annarita; Molik, David; Raciti, Daniela; Wright, Adam; Yook, Karen; Reiser, Leonore

doi:10.17912/micropub.biology.001896

µP

microPublication Biology

Leyla Cabugos¹, Katheryn Buble², Jenna Daenzer³, Sook Jung², Dorrie Main², Annarita Marrano⁴, David Molik⁵, Daniela Raciti⁶, Adam Wright⁷, Karen Yook⁶, and Leonore Reiser⁴^§

¹Robert E. Kennedy Library, California Polytechnic State University, San Luis Obispo, California, United States

²Department of Horticulture, Washington State University, Pullman, Washington, United States

³Genetics Society of America, Rockville, Maryland, United States

⁴Phoenix Bioinformatics, Newark, California, United States

⁵Center for Scholarly Publishing, Kansas State Libraries, Kansas State University, Manhattan, Kansas, United States

⁶Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, California, United States

⁷Adaptive Oncology Department, Ontario Institute for Cancer Research, Toronto, Ontario, Canada

^§Correspondence to: Leonore Reiser (lreiser@arabidopsis.org)

Abstract

Description

Methods

Extended Data

Description: Source Data and Ontology Terms for AgBioDatabase Finder Profiles. The tab ‘AgBioDatabase Source data’ contains the descriptive information used to populate the database profiles currently present in the AgBioDabase Finder. The tab ‘Datatype definitions and source ontologies’ contains a list of terms for data types supported by the tool, a link to the source and definition of the ontology term, and a streamlined definition used in the AgBioDatabase Finder tool. . Resource Type: Dataset. DOI: 10.22002/11wg8-jgx73

Acknowledgements

Funding

Author Contributions

Leyla Cabugos: Conceptualization, Methodology, Writing - original draft, Data curation, Validation
Katheryn Buble: Project administration, Resources, Software
Jenna Daenzer: Conceptualization, Data curation, Methodology, Validation, Writing - review & editing
Sook Jung: Conceptualization, Data curation, Methodology, Software, Validation, Writing - review & editing
Dorrie Main: Funding acquisition, Project administration, Resources, Software
Annarita Marrano: Conceptualization, Software
David Molik: Conceptualization, Data curation, Methodology, Validation, Writing - review & editing
Daniela Raciti: Conceptualization, Data curation, Methodology, Validation, Writing - review & editing
Adam Wright: Conceptualization, Data curation, Methodology, Validation, Writing - review & editing
Karen Yook: Conceptualization, Data curation, Methodology, Validation, Writing - review & editing
Leonore Reiser: Conceptualization, Data curation, Funding acquisition, Methodology, Project administration, Validation, Writing - review & editing

Reviewed By

Anonymous

Nomenclature Validated By

Anonymous

Database Reference ID: WBPaper00068828

History

Received: 10/9/2025
Revision Received: 11/14/2025
Accepted: 11/19/2025
Published Online: 11/19/2025

References

Copyright

© 2025 by the authors. This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International (CC BY 4.0) License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

Citation

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The microPublication project is supported by

The National Institute of Health -- Grant #: 1U01LM012672-01

microPublication Biology:ISSN: 2578-9430